After running the engine and trying a few different things it was decided to tear the engine down and find the problem. The #1 Rod bearing was scored and the crank shaft looks like it was never turned to a proper size and there is some kind of damage on almost every journal. I have never seen a crank that can be lifted up and down while torqued down.
This crank needs sized and new bearings and it should be ok. After a Micrometer was used to measure the crank it was found the bearings are stamped STD for standard size and the crank is at least ten thousands under the standard size. After machining it will most likely be 20 thousands under on the Rods and Mains.